SC09 Education Program Session Materials


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Plenaries | Computational | Biology | Chemistry | Engineering | Math | Physics | Parallel


Plenary Materials

Welcome and Overview Plenary

Scott Lathrop (Education Chair), Wilf Pinfold (SC09 Chair), Bob Panoff (Shodor), Charlie Peck (Earlham College), Bill Gropp (SC09 Technical Program Chair), Becky Verastegui (SC09 Exhibits Chair), Tiki Suarez-Brown (Broader Engagement Chair, Steve Gordon (Ohio Supercomputer Center)

Teach Parallel Panel

Charlie Peck (Earlham College), Tom Murphy (Contra Costa College), Paul Steinberg (Intel)

Computational Thinking Session Materials

Introduction to Computational Thinking

Bob Panoff (Shodor Education Foundation), Susan Ragan (Maryland Virtual High School of Science and Mathematics)

Other People's Models

Bob Panoff (Shodor Education Foundation), Susan Ragan (Maryland Virtual High School of Science and Mathematics)

Introduction to Systems Thinking

Bob Panoff (Shodor Education Foundation), Susan Ragan (Maryland Virtual High School of Science and Mathematics)

Advanced Modeling with Vensim

Bob Panoff (Shodor Education Foundation), Steve Gordon (Ohio Supercomputer Center)

Introduction to Agent Modeling

Bob Panoff (Shodor Education Foundation), Susan Ragan (Maryland Virtual High School of Science and Mathematics)

Computational Thinking with Excel

Bob Panoff (Shodor Education Foundation), Susan Ragan (Maryland Virtual High School of Science and Mathematics)

Finding the Parallel In Nature

Bob Panoff (Shodor Education Foundation), Susan Ragan (Maryland Virtual High School of Science and Mathematics)

Computational Biology Session Materials

Computational Thinking for Molecular Biology and Sequence Analysis

Ananth Kalyanaraman (Washington State University), Jeff Krause (Shodor Education Foundation)

Transcriptomics: From Small-scale to Large-scale

Ananth Kalyanaraman (Washington State University)

Molecular Evolution and Phylogeny

Ananth Kalyanaraman (Washington State University), Jeff Krause (Shodor Education Foundation)

Biochemical Kinetics and Regulation

Ananth Kalyanaraman (Washington State University), Jeff Krause (Shodor Education Foundation)

Modeling for Systems Biology

Jeff Krause (Shodor Education Foundation)

Homology Modeling I

Masa Watanabe (University of California, Merced)

Homology Modeling II

Masa Watanabe (University of California, Merced)

Introduction to R for Biological Computing

Jeff Krause (Shodor Education Foundation)

Computational Chemistry Session Materials

Teaching Chemistry Using CCDC Database

Clyde Metz (College of Charleston), Shawn Sendlinger (North Carolina Central University)

Properties of Molecules

Clyde Metz (College of Charleston), Shawn Sendlinger (North Carolina Central University)

Chemical Kinetics

Clyde Metz (College of Charleston), Shawn Sendlinger (North Carolina Central University)

Basic Molecular Modeling

Shawn Sendlinger (North Carolina Central University), Clyde Metz (College of Charleston)

National Science Digital Library Using The Computational Science Education Reference Desk

Shawn Sendlinger (North Carolina Central University), and Clyde Metz (College of Charleston)

Intermediate Molecular Modeling

Shawn Sendlinger (North Carolina Central University), and Clyde Metz (College of Charleston)

Computational Engineering Session Abstracts

Modeling in Engineering using MATLAB

Steve Gordon and Siddharth Samsi (Ohio Supercomputer Center)

Simulink Basics for Engineering Applications

Ashok Krishnamurthy (Ohio Supercomputer Center), Siddarth Samsi (Ohio Supercomputer Center)

Introduction to Computational Fluid Dynamics

James Giuliani (Ohio Supercomputer Center)

Advanced Computational Fluid Dynamics

James Giuliani (Ohio Supercomputer Center)

Chemical Engineering Thermodynamics Modeling

Michael Paulaitus (Ohio State University)

Mechanical Engineering Applications

Dan Warner (Clemson University)

Bioengineering with COMSOL Multiphysics

Richard Hart (Ohio State University)

Parallel MATLAB

Siddharth Samsi and Ashok Krishnamurthy (Ohio Supercomputer Center)

Advanced Simulink for Modeling and Simulating Systems

Ashok Krishnamurthy (Ohio Supercomputer Center), Siddarth Samsi (Ohio Supercomputer Center)

Parallel MATLAB II: Creating a Parallel Application

Ashok Krishnamurthy and Siddharth Samsi (Ohio Supercomputer Center)

Computational Math Session Abstracts

Computational and Experimental Mathematics: C & E Math, All Sessions

Dan Warner and Neil Calkin (Clemson University)

  • All sessions will use the following link: https://clemix.clemson.edu:34567/
  • Create an account, login, click on "Published" and make editable copies of the worksheets published by SC2009

Computational Physics Session Abstracts

Examples of Computation to Use in Physics Courses

Rubin Landau (Oregon State University)

N-Body I

Dave Joiner (Kean University), Norman Chonacky (Yale University)

Pathways

Dave Joiner (Kean University), Norman Chonacky (Yale University), Mario Belloni (Davidson College), Richard Gass (University of Cincinnati)

EJS - Easy Java Simulations

Mario Belloni (Davidson College)

N-Body II

Dave Joiner (Kean University), Norman Chonacky (Yale University)

Digital Libraries

Dave Joiner (Kean University), Norman Chonacky (Yale University), Mario Belloni (Davidson College), Richard Gass (University of Cincinnati)

Introduction to Parallel Computing I

Richard Gass (University of Cincinnati)

Parallel Computing II - Applications

Richard Gass (University of Cincinnati)

Computational Physics/Chemistry with ABINIT

Jeff Rufinus (Widener University)

Parallel Programming Session Abstracts

What the Heck is Supercomputing?

Charlie Peck (Earlham College)

Tyranny of the Storage Hierarchy

Charlie Peck (Earlham College)

Bootable Cluster CD with MPI Examples

Leandro Avila (University of Northern Iowa)

Message Passing Interface (MPI) Programming I

Tom Murphy (Contra Costa College)

openMP Programming

Tom Murphy (Contra Costa College)

CUDA Programming

Leandro Avila (University of Northern Iowa)

Message Passing Interface (MPI) Programming II

Kay Wanous (Earlham College)